{"id":1100,"date":"2022-05-04T16:20:00","date_gmt":"2022-05-04T14:20:00","guid":{"rendered":"https:\/\/makit.edu.umontpellier.fr\/?p=1100"},"modified":"2024-02-28T10:27:08","modified_gmt":"2024-02-28T09:27:08","slug":"anton-nekrutenkos-event-microbial-evolutionary-genomics-and-data-analysis-17-18-may-2022","status":"publish","type":"post","link":"https:\/\/makit.edu.umontpellier.fr\/fr\/2022\/05\/04\/anton-nekrutenkos-event-microbial-evolutionary-genomics-and-data-analysis-17-18-may-2022\/","title":{"rendered":"G\u00e9nomique \u00e9volutive microbienne et analyse des donn\u00e9es"},"content":{"rendered":"<h5 class=\"wp-block-heading\"><strong><u>Mardi 17 mai: Mini-symposium sur la g\u00e9nomique \u00e9volutive microbienne<\/u><\/strong><\/h5>\n\n\n\n<p class=\"wp-block-paragraph\">En raison de la prolif\u00e9ration de nouvelles technologies de g\u00e9n\u00e9ration de donn\u00e9es, la biologie microbienne est devenue une science ax\u00e9e sur les donn\u00e9es.&nbsp;<strong>Pourtant, il existe encore un \u00abm\u00e9lange\u00bb limit\u00e9 entre les chercheurs qui \u00e9tudient les questions biologiques et leurs coll\u00e8gues computationnels.<\/strong>&nbsp;L\u2019objectif de ce mini-symposium est de r\u00e9unir des repr\u00e9sentants des deux parties (\u00abhumides\u00bb et \u00absecs\u00bb) et de d\u00e9couvrir comment ils peuvent \u00eatre plus conscients des d\u00e9fis et des priorit\u00e9s de l\u2019autre. La combinaison unique d'orateurs couvrira les domaines suivants:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Analyse des communaut\u00e9s microbiennes<\/li>\n\n\n\n<li>\u00c9volution exp\u00e9rimentale<\/li>\n\n\n\n<li>Reconstruction phylog\u00e9n\u00e9tique<\/li>\n\n\n\n<li>Analyse de la recombinaison<\/li>\n\n\n\n<li>Analyse de la s\u00e9lection<\/li>\n\n\n\n<li>Logistique des donn\u00e9es et automatisation de l'analyse<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><em>Programme et intervenants<\/em><\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>9 heures \u2013 9 h 10<\/strong>Accueil et introduction<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>9 h 10 \u2013 9 h 45<\/strong><em>\u00abDynamique et \u00e9volution des microbes<\/em>communaut\u00e9s\u00bb<strong>\u2013<\/strong><a href=\"https:\/\/www.sheffield.ac.uk\/biosciences\/people\/academic-staff\/ellie-harrison\"><strong>Ellie Harrison<\/strong><\/a>, Universit\u00e9 de Sheffield, Royaume-Uni<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>de 9 h 45 \u00e0 10 h 5<\/strong>&nbsp;<em>\u00abAnalyse des communaut\u00e9s microbiennes\u00bb<\/em>\u2013<a href=\"http:\/\/pagesperso.univ-brest.fr\/~maignien\/contact.html\"><strong>Lois Maignien<\/strong><\/a>Universit\u00e9 de Bretagne occidentale, France<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>10 h 5 \u2013 11 heures<\/strong><em>\u00abUn environnement analytique mondial pour moi\u00bb<\/em>\u2013<a href=\"https:\/\/training.galaxyproject.org\/hall-of-fame\/shiltemann\/\"><strong>Saskia Hiltemann<\/strong><\/a>, Erasmus MC, Pays-Bas<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><em>10 h 25 \u2013 10 h 30 Pause-caf\u00e9<\/em><\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>11 heures \u2013 11 h 20<\/strong><em>\u00ab Dynamique \u00e9volutive de la r\u00e9sistance aux antibiotiques \u00bb<\/em>\u2013<a href=\"https:\/\/www.cefe.cnrs.fr\/fr\/recherche\/ee\/gee\/800-c\/2721-stephanie-bedhomme\"><strong>St\u00e9phanie Bedhomme<\/strong><\/a>, CNRS\/Centre d'\u00e9cologie fonctionnelle et \u00e9volutive (CEFE), France<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>de 11 h 20 \u00e0 11 h 40<\/strong><em>\u00abParticipation au codon et r\u00e9sistance aux antibiotiques\u00bb<\/em>\u2013<a href=\"https:\/\/www.ugent.be\/bw\/foodscience\/en\/research\/faculty\/matijn-callens.htm\"><strong>Martijn Callens<\/strong><\/a>, Universit\u00e9 de Gand, Belgique<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>11 h 40 \u2013 12 heures<\/strong><em>\u00ab\u00c9volution exp\u00e9rimentale\u00bb<\/em><strong>\u2013<\/strong><a href=\"https:\/\/www.cefe.cnrs.fr\/fr\/recherche\/ee\/gee\/803-doc\/4043-michael-finnegan\"><strong>Mike Finnegan<\/strong><\/a>, CNRS\/Centre d'\u00e9cologie fonctionnelle et \u00e9volutive (CEFE), France<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>de 12 heures \u00e0 12 h 20<\/strong><em>\u00ab Dynamique co\u00e9volutive entre les phages et l\u2019immunit\u00e9 CRISPR \u00bb<\/em>\u2013<a href=\"https:\/\/evolepid.cefe.cnrs.fr\/people.php?name=gandon\"><strong>Sylvain Gandon<\/strong><\/a>, CNRS\/Centre d'\u00e9cologie fonctionnelle et \u00e9volutive (CEFE), France<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><em>12 h 20 \u2013 14 h 00 Pause-d\u00e9jeuner<\/em><\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>14 heures \u2013 14 h 20<\/strong><em>\u00abAnalyse de l\u2019\u00e9volution mol\u00e9culaire et de la s\u00e9lection\u00bb<\/em>\u2013<a href=\"https:\/\/igem.temple.edu\/people\/person\/e266d9a5b7f043109baecc3c340491f6\"><strong>\u00e9tang Sergei Kosakovsky<\/strong><\/a>, Temple University, \u00c9tats-Unis<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>14 h 20 \u2013 14 h 40<\/strong><em>Biologie synth\u00e9tique<\/em>\u2013<a href=\"http:\/\/www.cbs.cnrs.fr\/index.php\/fr\/personnel?PERS=Guillaume%20Cambray\"><strong>Guillaume Cambray<\/strong><\/a>, CNRS\/Centre de biologie structurelle (CBS), France<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>14 h 40 \u2013 15 heures<\/strong><em>\u00abAnalyse \u00e0 grande \u00e9chelle des donn\u00e9es relatives \u00e0 la pand\u00e9mie\u00bb<\/em>\u2013<a href=\"https:\/\/github.com\/wm75\"><strong>Wolfgang Maier<\/strong><\/a>, Universit\u00e9 de Fribourg, Allemagne<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>15 heures \u2013 15 h 20<\/strong><em>\u00abAnalyse et repr\u00e9sentation des donn\u00e9es\u00bb<\/em>\u2013<a href=\"https:\/\/engineering.ucsc.edu\/people\/max\"><strong>Maximilan Haeussler<\/strong><\/a>, UC Santa Cruz, \u00c9tats-Unis<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>15 h 20 \u2013 15 h 40<\/strong><em>\u00abCadres d\u2019analyse des donn\u00e9es pour la g\u00e9nomique microbienne\u00bb<\/em>\u2013<strong>Anton Nekrutenko<\/strong>, Pennsylvania State University, \u00c9tats-Unis &amp; MAK\u2019IT Fellow (JRU CEFE)<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>de 15 h 40 \u00e0 15 h 50<\/strong>Observations finales<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong><em>15:50 -16:30 Pause-caf\u00e9<\/em><\/strong><\/p>\n\n\n\n<h5 class=\"wp-block-heading\"><strong><u>Mercredi 18 mai: Atelier sur l'analyse des donn\u00e9es microbiennes<\/u><\/strong><\/h5>\n\n\n\n<p class=\"wp-block-paragraph\">L'atelier portera sur l'application des donn\u00e9es de s\u00e9quen\u00e7age (Illumina, Oxford Nanopore, PacBio) \u00e0 l'analyse de&nbsp;<a href=\"https:\/\/training.galaxyproject.org\/training-material\/topics\/metagenomics\/\" target=\"_blank\" rel=\"noreferrer noopener\">communaut\u00e9s microbiennes<\/a>,&nbsp;<a href=\"https:\/\/training.galaxyproject.org\/training-material\/search?query=assembly\" target=\"_blank\" rel=\"noreferrer noopener\">assemblage du g\u00e9nome<\/a>,&nbsp;<a href=\"https:\/\/training.galaxyproject.org\/training-material\/topics\/variant-analysis\/tutorials\/sars-cov-2-variant-discovery\/tutorial.html\" target=\"_blank\" rel=\"noreferrer noopener\">analyse de la variation<\/a>, et&nbsp;<a href=\"https:\/\/stevenweaver.github.io\/hyphy-site\/tutorials\/current-release-tutorial\/\" target=\"_blank\" rel=\"noreferrer noopener\">identification des sites en cours de s\u00e9lection<\/a>.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">9:00 \u2013 12:00 \u2013 Partie 1<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><em>12 h 00 \u2013 13 h 30 \u2013 Pause-d\u00e9jeuner<\/em><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">13 h 30 \u2013 16 heures \u2013 2e partie<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Pr\u00e9sentateurs:<\/strong><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><a href=\"https:\/\/training.galaxyproject.org\/hall-of-fame\/shiltemann\/\"><strong>Saskia Hiltemann<\/strong><\/a>&nbsp;\u2013 Erasmus MC, Pays-Bas<\/li>\n\n\n\n<li><a href=\"https:\/\/training.galaxyproject.org\/hall-of-fame\/hexylena\/\"><strong>Helena Rasche<\/strong><\/a>&nbsp;\u2013 Erasmus MC &amp; Avans Hogeschool, Pays-Bas<\/li>\n\n\n\n<li><a href=\"https:\/\/muse.edu.umontpellier.fr\/en\/anton-nekrutenko\/\"><strong>Anton Nekrutenko<\/strong><\/a>&nbsp;\u2013 Pennsylvania State University, \u00c9tats-Unis &amp; MAK\u2019IT Fellow (JRU CEFE)<\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/wm75\"><strong>Wolfgang Maier<\/strong><\/a>&nbsp;\u2013 Universit\u00e9 de Fribourg, Allemagne<\/li>\n<\/ul>","protected":false},"excerpt":{"rendered":"<p>Tuesday 17 May: Mini-symposium on microbial evolutionary genomics Due to proliferation of new data generation technologies, microbial biology has become a data driven science.&nbsp;Yet there is still a limited \u201cmixing\u201d between researchers studying biological questions and their computational colleagues.&nbsp;The goal of this mini-symposium is to bring together representatives of the two sides (\u201cwet\u201d and \u201cdry\u201d)&hellip;<\/p>","protected":false},"author":1087,"featured_media":1015,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","footnotes":""},"categories":[29229,29407],"tags":[],"class_list":["post-1100","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-actualites-en","category-seminar"],"acf":[],"_links":{"self":[{"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/posts\/1100","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/users\/1087"}],"replies":[{"embeddable":true,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/comments?post=1100"}],"version-history":[{"count":0,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/posts\/1100\/revisions"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/media\/1015"}],"wp:attachment":[{"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/media?parent=1100"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/categories?post=1100"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/makit.edu.umontpellier.fr\/fr\/wp-json\/wp\/v2\/tags?post=1100"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}